Hello,
Can you try re-running with migp enabled = add
—migp
to the melodic call?
Kind Regards
Matthew
> On 4 Oct 2016, at 16:13, maria tziraki <[log in to unmask]> wrote:
>
> Hi fsl experts,
>
> I would like to ask a question regarding melodic, as I have tried to run it from the command line using this: melodic -i inputlist.txt -o groupmelodic_after_AROMA.ica -v --nobet --bgthreshold=10 –tr=2.9999 --report -d 25 --mmthresh=0.5 --Ostats -a concat
>
> and I get the following error message both locally and from the cluster:
>
> Reading data file A_006_w0_fmri.ica/aroma_filtered_func_data_clean_standard ... done
> terminate called after throwing an instance of 'std::bad_alloc'
> what(): std::bad_alloc
> Aborted
> [mbchkmt2@login1(csf) fmri]$
>
>
> I thought I run out of space or smth, but that is not it, as I tried it on a cluster too.
>
> The data I am providing in inputlist.txt are RS fMRI pediatric data, that a) did Single-session ICA *with peads template ; b) identified motion components with AROMA; c) removed them using fsl_regfilt which gave me an aroma_filtered_func_data_clean.nii.gz for each participant; d) this was then brought to standard space for each participant using smth like:
> #!/bin/sh
> for j in `ls -d */*fmri.ica` ; do
> applywarp -r ${j}/reg/standard.nii.gz -i ${j}/aroma_filtered_func_data_clean.nii.gz -o ${j}/aroma_filtered_func_data_clean_standard --warp=${j}/reg/example_func2standard_warp.nii.gz
> done
> ls -1 */*fmri.ica/aroma_filtered_func_data_clean_standard.nii.gz >> inputlist.txt
>
> Would that be ok? Why the group melodic crashes?
>
> Thank you for your advice,
>
> Best wishes,
> Maria
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