Alright, nevermind. Had to enable expert mode in cat_defaults.m to get the CSF option to show up, though it seems weird that without that enabled even manually setting the fields didn't work, especially since it's labeled as expertgui, so I assumed it did not affect the underlying processing but just the GUI interface.
-Mike
> -----Original Message-----
> From: Angstadt, Mike
> Sent: Thursday, September 22, 2016 1:09 PM
> To: [log in to unmask] <[log in to unmask]>
> Subject: RE: CAT12 CSF question
>
> As a follow-up, I ran the job anyway with the error message about No field(s) named CSF to see if it works, as a call to
> cat_get_defaults() returns a structure that has a CSF field in outputs, so I was hoping it would use it despite the message.
>
> Unfortunately it still doesn't write out the CSF image.
>
> -Mike
>
> > -----Original Message-----
> > From: Angstadt, Mike
> > Sent: Thursday, September 22, 2016 12:55 PM
> > To: [log in to unmask]
> > Subject: CAT12 CSF question
> >
> > How do I get CAT12 to output CSF images during segmentation?
> > Previously with VBM8 it was included as a tissue type under the
> > Writing Options section of the batch job, with options to output native, modulated normalized, and DARTEL. In CAT12, there are only
> GM and WM options there, not CSF.
> >
> > I tried just manually adding it to the job in the way that it is for the other tissue types (and the way it was in VBM8):
> > matlabbatch{1}.spm.tools.cat.estwrite.output.CSF.mod=1;
> > But the job manager just complains:
> > Item output: No field(s) named
> > CSF
> >
> > A search of the mailing list hasn't turned up an answer, though if I've just missed one please point me towards it.
> >
> > -Mike
> >
> > --
> > Mike Angstadt
> > Research Computer Specialist / PANLab Lab Manager Department of
> > Psychiatry / University of Michigan
> > (734) 936-8229
> >
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