Hi Paul,
More specifics on the GPU implementation of RELION-2.0 are also on bioRxiv:
http://biorxiv.org/content/early/2016/06/19/059717
Note that we're still beta-testing this with a relatively small group of
experienced users. Hopefully very soon we will open this up to the
entire community.
HTH,
Sjors
On 09/14/2016 10:45 AM, paul fretter (NBI) wrote:
> Good morning,
>
> Apologies for the interruption.
>
> I’m planning to provide upport for Relion for one of our Institutes, with a view to providing it on our HPC clusters (CentOS7, SLURM), and I would be keen to know of any similar experiences you may, so that we can plan/budget accordingly.
>
> How much of the processing takes place on the user’s desktop?
> What are the ideal hardware requirements for visualization on the desktop?
>
> How much HPC resource is recommended?
>
> - Optimal number of CPU cores per job?
>
> - Typical memory requirements per job?
>
> - Is a dedicated node required?
>
> - Will it utilise GPU (Tesla) integrated in HPC nodes ?
>
> - If so, what specification is recommended?
>
> Any information gratefully received.
>
> Best regards
> Paul
>
> [cid:image001.png@01D20E75.209A47B0]
> NBI Partnership Ltd
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>
>
> Paul Fretter
> Head of CiS
>
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>
>
--
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres
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