Hi Matteo,
thank you for your reply... i opened the folder and inside I have:
bvals mean_dsamples.nii.gz merged_ph1samples.nii.gz
bvecs mean_f1samples.nii.gz merged_ph2samples.nii.gz
commands.txt mean_f2samples.nii.gz merged_th1samples.nii.gz
dyads1_dispersion.nii.gz mean_fsamples.nii.gz merged_th2samples.nii.gz
dyads1.nii.gz mean_ph1samples.nii.gz monitor
dyads2_dispersion.nii.gz mean_ph2samples.nii.gz nodif_brain_mask.nii.gz
dyads2.nii.gz mean_S0samples.nii.gz prova
dyads2_thr0.05.nii.gz mean_th1samples.nii.gz viewAll_0.005
fdt_coordinates.txt mean_th2samples.nii.gz viewAll_0.4
jobs merged_f1samples.nii.gz xfms
logs merged_f2samples.nii.gz
so probably the preprocessing went fine?
I don't understand whether it matters the folder from which you run the script or not. Is this the output of preproc?
it also took a lot of time to run (more than 10 hours). how does the correct output of launch tractography would look like? and how can I use the display script to visualize the tract I am interested in?
thank you so much for your help!
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