Hi,
I would like to confirm that I am running the correct command to get the network strength for my network of interest.
I split (fslsplit) dr_stage2_ic###
I get N subject volumes
fslmeants -i $subjvolumes.nii.gz -o $Strength -m $Mask
The mask I acquire from the stats directory:
fslmaths probmap_# -thr 0.95 thresh_probmap_#
fslmaths thresh_probmap_# -bin -mul thresh_zstat#.nii.gz mask_new_thresh_zstat_#
I use the probability mask thresh_probmap_#.nii.gz
Thank you!
Best, Jasmin
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