Hi again
One extra information. I think the problem is with the mask creation step. When I ran the fslmaths binary mask creation command together withthe thresholding option, it worked
fslmaths sub1.nii.gz -thr 25 -bin test/mask_0001
However if I only write fslmaths sub1.nii.gz -bin test/mask_0001 without the -thr then it only generates an empty image. So I think this is the step that is actually causing all the issue.
Now my question is; how can I integrate this in to the dual regression script, because these mask creation commands (fslmaths) automatically run as part of the DR pipeline, so how can I actually modify them to include this -thr option. And should I really do the modification to the original DR script, or is there another way out of this ?
I will highly appreciate a response
kind regards,
Rabia
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