Hello,
It looks like the motion correction step in the processing has gone catastrophically wrong. I would first check your input timeseries for any oddities, and then manually run mcflirt
mcflirt -in <original functional data> -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final
and check that the output looks OK.
Kind Regards
Matthew
> I uploaded it. Twice accidentally :)
> Thank you for your willingness to look at this issue.
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