Hello,
If I understand your requirements, I think the correct call would be:
fslswapdim input.nii.gz AP RL IS output.nii.gz
However the best thing is to run the call and view the output, if it is not what is desired, then it should be fairly quick to swap around the labels to find the right call.
Kind Regards
Matthew
> Dear guys,
>
> Could I ask if I want to make the default view of a nifti image in sagittal sections with nose facing left and head top in the normal up position, and the image is radiological oriented (as fslorient reported), how could I use the anatomical labels in fslswapdim? e.g.:
>
> fslswapdim a = AP, b = SI, c = RL
>
> Is this AP/SI/RL sequence right?
>
> Thanks,
> Kaiming
>
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