Hello-
I am working to alter the tbss_non_FA script such that it references a different brain atlas for my animal model. I am wondering what I should do in the line that references the LowerCingulum_1mm data, as we do not currently have a mask for this in our data set. Is there a way that I can alter this script such that this will not be a problem? For reference, this is the line I am referring to:
${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
Thanks!
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