Dear FSL experts,
I found a similar topic https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1301&L=FSL&P=R38910&1=FSL&9=A&J=on&d=No+Match%3BMatch%3BMatches&z=4, where I have 0 intensity in FA images after FWE process. I don't want to run tbss_1_preproc which returns a brain mask with holes in it, corresponding to 0 intensity in FA images.
In the previous post, Steve gave a solution by changing tbss_1_preproc script from
$FSLDIR/bin/fslmaths $f -min 1 -ero -roi 1 $X 1 $Y 1 $Z 0 1 FA/${f}_FA
to
$FSLDIR/bin/fslmaths $f -min 1 -dilM -ero -ero -roi 1 $X 1 $Y 1 $Z 0 1 FA/${f}_FA
I tried but it's not work. I wonder if there is another way? Thank you!
bw,
Joyce
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