Dear Volkmar,
thank you for clarification and the clear answer.
So I will change my file structure to process my data in different directories (instead of only changing the fileprefix).
Thank you for your help
Andi
----- Original Nachricht ----
Von: Volkmar Glauche <[log in to unmask]>
An: SPM Anonymous <[log in to unmask]>
Datum: 29.09.2015 15:01
Betreff: Re: change filename prefix of "spm.spatial.normalise"
> Dear Andi,
>
> during the transition from "Old Normalise" to DARTEL/Segment based
> normalisation functions, this functionality unfortunately got lost. A
> brief code review revealed that the prefixes used are hardcoded in the
> current version of SPM12. I.e. not even spm_defaults are honoured - as
> you already noticed yourself.
> Although it is not relevant for the majority of SPM users, it would be
> good to have that feature back at some point in the future. I'll have
> a look whether that would be feasible.
>
> Best,
>
> Volkmar
>
> Zitat von SPM Anonymous <[log in to unmask]>:
>
> > Hello Volkmar,
> > thank you for the answer.
> > What do you mean with "saved batch"...? You mean within a matlab script?
> >
> > So it is not possible to change the output prefix with something like
> that:
> >
> > clear matlabbatch
> > spm_get_defaults('normalise.write.prefix','a'); %try 1
> > spm('defaults','fmri');
> > spm_get_defaults('normalise.write.prefix','a'); %try 2
> > spm_jobman('initcfg');
> > spm_get_defaults('normalise.write.prefix','a'); %try 3
> > matlabbatch{1}.spm.spatial.normalise.write.subj.def =
> > {fullfile(DATA_DIR,'y_MAG.nii')};
> > matlabbatch{1}.spm.spatial.normalise.write.subj.resample = {
> > fullfile(DATA_DIR,normdata{knormdata}) };
> > matlabbatch{1}.spm.spatial.normalise.write.woptions.bb =
> > ones(2,3)*NaN;
> > matlabbatch{1}.spm.spatial.normalise.write.woptions.vox =
> > [NaN NaN NaN];
> > matlabbatch{1}.spm.spatial.normalise.write.woptions.interp = 4;
> > spm_jobman('run',matlabbatch);
> >
> > => did not run... or did not give files with the prefix 'a' (should
> > it run with one of these lines?)
> >
> > So I need maybe to create different "spm_my_defaults.m" for my case?
> >
> > Thank you
> >
> > Andi
> >
> >
>
>
>
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> Freiburg Brain Imaging
> http://fbi.uniklinik-freiburg.de/
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