Hello,
I am trying to us FSL to do VBM analysis on a population of pediatric (ages 7-17) MRIs. I have been running into a lot of issues with the first BET step. I have tried adjusting the parameters (f, g, c) and have used robust, neck, and eye removal options but haven't had much success, especially in the MRI's for the younger kids. The program often cuts of large portions of the frontal lobe. Has anyone had success with BET/extracting skull from a pediatric population? I am thankful for any suggestions or work arounds!
Thank you!
Rachel
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