Hello FSL experts
I'm currently attempting to use tbss on rodent data and as such am rewriting the script for the tbss_2_reg portion. Specifically I'll be rewriting fnirt parameters into the fsl_reg portion of the script. My question may be basic but I'm wondering about the
-intmod option. I have been working to optimize the registration of the fa images and it seems setting intmod to none is the best option for the registration. My question is, would this still be appropriate to write into the tbss script and obtain appropriate voxelwise comparisons?
Patrick
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