Thank you for comments.
I am using mice brain image resolution of 700 micron and perfectly coregistered and normalized and even segmented using normal VBM procedure and uses a C57 template, gm,wm and csf tissue class maps from spmmouse.
For Dartel processing, I used rcon (control) images obtained after coregistration.
Spm---> tools--> new segment
Bias regularization (0.0001), FWHM 30 mm cut off, 3 tissues ( gm, wm and csf) and all native + dartel imported, no affine registration and sampling distance 2, and all other parameters are default. It created both c1,c2 and c3 images and rc1,rc2 and rc3 images. Coronal and sag planes were chopped off in rc1,rc2 and rc3 images. This is where I got struck. Could you please suggest me if anything needs to be adjusted? Thanks a lot
From: SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]] On Behalf Of H. Nebl
Sent: Saturday, June 27, 2015 6:07 AM
To: [log in to unmask]
Subject: Re: [SPM] Mice Dartel template
Maybe you can provide additional information and/or your preprocessing batches? It might be related to the setting of the bounding box, which would have to be adjusted at some stage then, but this depends on the preprocessing pipeline.