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Subject:

Error in vbm12segmentation: Undefined function or variable "wr"

From:

Marieke <[log in to unmask]>

Reply-To:

Marieke <[log in to unmask]>

Date:

Wed, 17 Jun 2015 16:15:33 +0100

Content-Type:

text/plain

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text/plain (51 lines)

Hi, I've been using VBM12:Segmentation, which worked fine before, but now it gives an error. I was wondering whether something has changed in the code since the last update?
 
Specifically, in the step segmentation, modulated normalized, you can choose between 1) affine and non-linear (produces mwp* images) and 2) non-linear only (produces mw0* images). If you choose non-liner only, it works fine, but if you choose affine&non-linear it gives the error shown below. It seems that the function vbm_io_writenii skips defining 'wr' when the option is set to 1?

Hope you can help out, 

Best Marieke

------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'VBM12: Segmentation'

------------------------------------------------------------------------
VBM12 r684:                ./VBM/T1_sub001.nii,1
------------------------------------------------------------------------
NLM-Filter:                                                         290s
Affine Registration:                                                126s
SPM-Preprocessing 1:                                                226s
SPM-Preprocessing 2:                                                186s
Global Intensity Correction:                                         61s
NLM-Filter after Global Intensity Correction (ORNLMstr=0.03):        24s
Local Adaptive Segmentation (LASstr=0.50):                          174s
ROI Segmentation (Partitioning):                                    107s
Blood Vessel Correction (BVCstr=0.50):                                5s
Skull-stripping using graph-cut (gcutstr=0.50):                      34s
Amap without Kmeans with MRF-Filterstrength 0.15:                    29s
Final cleanup (gcutstr=0.50):                                        25s
Dartel normalization:                                               480s
Write result maps:                                                 
------------------------------------------------------------------------
VBM Preprocessing error: MATLAB:UndefinedFunction: ./VBM/T1_sub001.nii,1 
------------------------------------------------------------------------
Undefined function or variable "wr".
------------------------------------------------------------------------
  259 - vbm_io_writenii
 1407 - cg_vbm_write
  326 - cg_vbm_run_job
   10 - cg_vbm_run_newcatch
  162 - run_job
  121 - cg_vbm_run
   29 - cfg_run_cm
 1673 - local_runcj
  953 - cfg_util
  707 - MenuFileRun_Callback
   96 - gui_mainfcn
   53 - cfg_ui
------------------------------------------------------------------------
Done    'VBM12: Segmentation'
Done

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