Hello FSL experts,
I am trying to run a very simple higher level ANOVA analysis. I comparing the effects of rest vs. a cognitive manipulation.
I ran the 17 first level analyses and they came out beautiful. I then entered the 17 respective feat files into a higher level analysis and was surprised to see the following error messages. Needless to say, the analysis failed.
First came the below in the log corresponding to each of the 17 subjects.
"/usr/local/fsl/bin/applywarp --ref=reg/standard --in=example_func --out=frgrot_l9RBki --warp=reg/highres2standard_warp --premat=reg/example_func2highres.mat --interp=spline
Error: failed to open file frgrot_l9RBki.nii.gz
Image Exception : #22 :: ERROR: Could not open image frgrot_l9RBki
terminate called after throwing an instance of 'RBD_COMMON::BaseException' "
The last error message states
"/usr/local/fsl/bin/fslmaths mask -bin -mul 10000 mean_func -odt float
Cannot open volume mask for reading!
Error - not all input FEAT directories have the same set of contrasts! (currently looking in subject ID path for cope1)"
I've run similar analyses hundreds of times without any problems like this.
Do you have any suggestions? Thank you so much for your invaluable time.
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