Hi FSL experts,
I want to get significant cluster size and p values of WM tracts from
tbss_tfce_corrp.nii.gz file. I have already ran auto atlasquery command:
autoaq -i tbss_tfce_corrp_tstat1.nii.gz -t 0.95 -o MD_TES.txt -a "JHU
White-Matter Tractography Atlas" -p
Result:
=====[ tbss_MD_tfce_corrp_tstat1.nii.gz | JHU White-Matter Tractography
Atlas ]=====
ClusterIndex Voxels MAX MAX X (mm) MAX Y (mm) MAX Z (mm) COG X (mm) COG Y
(mm) COG Z (mm)
1 34153 0.999 20 24 33 5.56 -0.41 22.3
------------------------------------------
Structures to which each center of mass belongs to:
1,5.56,-0.41,22.3,JHU White-Matter Tractography Atlas,No label found!
------------------------------------------
Structures to which each cluster belongs to:
Cluster #1
Anterior thalamic radiation L:0.275701
Anterior thalamic radiation R:1.1548
Corticospinal tract L:0.296079
Corticospinal tract R:0.680965
Cingulum (cingulate gyrus) L:0.354698
Cingulum (cingulate gyrus) R:0.0200275
Cingulum (hippocampus) R:0.00333792
Forceps major:0.0008784
Forceps minor:3.15636
Inferior fronto-occipital fasciculus L:0.400785
Inferior fronto-occipital fasciculus R:1.76611
Inferior longitudinal fasciculus L:0.161274
Inferior longitudinal fasciculus R:0.630721
Superior longitudinal fasciculus L:2.39206
Superior longitudinal fasciculus R:2.57023
Uncinate fasciculus L:0.329078
Uncinate fasciculus R:0.502621
Superior longitudinal fasciculus (temporal part) L:1.01681
Superior longitudinal fasciculus (temporal part) R:0.80277
But i need cluster size and p values of each tracts from JHU White-Matter
Tractography Atlas. How can i get these values??
Thank you,
Archana
|