Hi Almudena,
you can do it with PyMOL, using PSICO's angle_between_helices with the "cafit" method. Example:
run https://raw.githubusercontent.com/speleo3/pymol-psico/master/psico/orientation.py
fetch 3pt6, async=0
as cartoon
angle_between_helices chain D+J, chain I+C, cafit
Hope that helps.
Cheers,
Thomas
On 04 Mar 2015, at 13:04, Almudena Ponce Salvatierra <[log in to unmask]> wrote:
> Hi everyone,
>
> I would like to ask if any of you know how to measure the angle between two nucleic acid helices? I am trying with pymol, but have not found a solution to it yet.
>
> Any ideas?
>
> Thanks a lot.
>
> Best,
>
> Almudena.
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
|