The program chimera will align homologous structures from which you can
generate a sequence alignment (based on the structural alignment)
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html
~JH
On 05.02.2015 14:41, Kgosisejo, Oarabile wrote:
> Hi all,
>
> Does anyone know of a program to use to superpose only selected
> protein residues, e.g. enzyme active site residues. I solved my
> structure using molecular replacement now I want to compare its active
> site to those of homologous structures. I have used the DALI server
> before but I had to upload the whole model.
>
> Thank you for your advise
>
> BEST REGARDS,
>
> Oarabile M. Kgosisejo, MSc. Candidate
> University of Saskatchewan
>
> [log in to unmask]
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