Hello,
I am having trouble using the atlas tools in fslview. Whenever I try to open an image in fslview I get an error message pop-up of "Failed to initialise AtlasWidget error" and none of the atlases appear.
In the terminal I also get the following:
** ERROR (nifti_image_read): failed to find header file for '/usr/share/fsl/data/atlases//HarvardOxford/HarvardOxford-cortl-prob-2mm'
** ERROR: nifti_image_open(/usr/share/fsl/data/atlases//HarvardOxford/HarvardOxford-cortl-prob-2mm): bad header info
I think the problem may be that the names of the files that it is looking for is wrong (notice the cortl versus cort). For example, this is the actual file that should be referenced
/usr/share/fsl/5.0/data/atlases/HarvardOxford/HarvardOxford-cort-prob-2mm.nii.gz
I am not sure how to change the fsl atlas directory or which files are linked to the atlas. Any help on how I might be able to get the atlas tools running would be much appreciated.
Also- I recently updated my fsl version to 5.0.8, fslview 3.1.8. when this problem started occurring.
Thank you,
Nadine
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