Hi Dialing,
86% favoured can actually be quite okay for an initial model. As long as
it doesn't have 14% in the disallowed region, the vast majority of
residues will be correct, or close enough to the correct answer that
they can be fixed easily. Of course, such a model will need tweaking,
but this is more or less the point of calling it an 'initial' model.
Cheers,
Robbie
On 01/12/2015 01:18 PM, Dialing Pretty wrote:
> Dear All,
>
> If an initial PDB has only 86% residues in the Ramachandran favored region, it
> would mean there is a significant error (for example significant length of
> protein fragment in the total protein assigned to the wrong electron density map
> position) , right?
>
> Dialing
>
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