Hello Knut,
It looks like the version of fsl_sub on your cluster, although old, has been patched to use slurm. You may wish to attempt to replace the 5.0.7 fsl_sub with this file.
Kind Regards
Matthew
> Dear FSL expoort
>
> I am running FSL on a cluster with slurm. When I run bepostx with slurm
> modification, I get the error message below.
> What can cause this error?
>
> subjectdir is /usit/abel/u1/kjbjuland/subjects/tracula/3002/dmri
> Making bedpostx directory structure
> Queuing preprocessing stages
> /cluster/software/VERSIONS/fsl-5.0.7/bin/fsl_sub: line 337: $taskfile:
> ambiguous redirect.
> Queuing parallel processing stage
>
> ----- Bedpostx Monitor -----
> /cluster/software/VERSIONS/fsl-5.0.7/bin/fsl_sub: line 337: $taskfile:
> ambiguous redirect.
> Queuing post processing stage
> /cluster/software/VERSIONS/fsl-5.0.7/bin/fsl_sub: line 337: $taskfile:
> ambiguous redirect.
>
> I am attaching the differences between the fsl_sub that is installed on
> the cluster and the fsl_sub that is included in FSL 5.0.7. The cluster
> uses FSl 5.0.7 as the default version of FSL.
>
> Best regards,
>
> Knut Jørgen Bjuland
> NTNU
>
> <slurm.patch>
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