Dear all,
I have a question about the Eddy routine. Suppose I have already run the eddy current correction (after topup) for one data set and got the ***.eddy_parameters from Eddy. Now if I want to apply the same unwarping transformation to another data set (the two data sets have the same number of volumes and bvecs/bvals), what is the best way to do it? If I use Applywarp, how can I use the coefficients in the .eddy_parameters file as the warping coefficients (--warp) for the Applywarp?
Thank you very much!
Best,
Hua
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