Hi FSL group,
I just want to verify that I'm using the tractography tool correctly. I'm interested in a tract between 2 MNI ROIs, starting at the left DLPFC and ending at the left caudate. I have included a waypoint mask with the left DLPFC and white matter MNI mask, an exclusion mask of the mid-sagittal plane so that tracking doesn't cross into the other hemisphere, and a termination mask of the right caudate.
What I'm seeing is a path that goes through both the left DLPFC and left caudate, but doesn't stop at the caudate. Instead, the path continues through the caudate to other parts of the brain and it also looks like the tract goes past the DLPFC as well. I can attached some pictures if needed to illustrate the issue.
Your help would be greatly appreciated!