Dear FSL Experts,
I'm having issues running FSL First with T1 data that have motion artefact. Due to the specific condition of my subjects, this artefact is characteristic of their scans.
I'm running a script called act_anat_prepare_fsl supplied by mrtrix3 developers, that uses FSL First. I received the attached error log for both FSL First by itself and for the act_anat_prepare_fsl script (attachment-1).
In both error logs, First fails silently and notifies that a particular vtk file is not created, thereby ending the First process.
I tried to manually run the act_anat_prepare_fsl script using separate commands as per the script, to get a better idea of the exact error. The commands and the error messages are attached (attachment-2 and attachment-3 respectively) for your persual.
Any assistance to overcome this issue is much appreciated!
Kind regards,
Ishani
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