Hi Mark,
Unfortunately this fix didn't make it in to FSL 5.0.7, but we will make sure to add it to FSL 5.0.8.
Kind Regards
Matthew
> Hi Jesper,
>
> I just ran topup build 507 and the result is the same. See below the fslhd output for my topup input and the fout output, respectively. Thanks! Mark
>
>
> filename all_B0_s1.nii.gz
>
> sizeof_hdr 348
> data_type INT16
> dim0 4
> dim1 96
> dim2 96
> dim3 50
> dim4 20
> dim5 1
> dim6 1
> dim7 1
> vox_units mm
> time_units s
> datatype 4
> nbyper 2
> bitpix 16
> pixdim0 0.000000
> pixdim1 1.000000
> pixdim2 1.000000
> pixdim3 1.000000
> pixdim4 8.100000
> pixdim5 0.000000
> pixdim6 0.000000
> pixdim7 0.000000
> vox_offset 352
> cal_max 0.0000
> cal_min 0.0000
> scl_slope 1.000000
> scl_inter 0.000000
> phase_dim 0
> freq_dim 0
> slice_dim 0
> slice_name Unknown
> slice_code 0
> slice_start 0
> slice_end 0
> slice_duration 0.000000
> time_offset 0.000000
> intent Unknown
> intent_code 0
> intent_name
> intent_p1 0.000000
> intent_p2 0.000000
> intent_p3 0.000000
> qform_name Scanner Anat
> qform_code 1
> qto_xyz:1 -1.000000 0.000000 -0.000000 50.033897
> qto_xyz:2 0.000000 0.000000 -1.000000 39.366829
> qto_xyz:3 0.000000 1.000000 -0.000000 -39.251816
> qto_xyz:4 0.000000 0.000000 0.000000 1.000000
> qform_xorient Right-to-Left
> qform_yorient Inferior-to-Superior
> qform_zorient Anterior-to-Posterior
> sform_name Scanner Anat
> sform_code 1
> sto_xyz:1 -1.000000 0.000000 0.000000 50.033897
> sto_xyz:2 0.000000 0.000000 -1.000000 39.366829
> sto_xyz:3 0.000000 1.000000 0.000000 -39.251816
> sto_xyz:4 0.000000 0.000000 0.000000 1.000000
> sform_xorient Right-to-Left
> sform_yorient Inferior-to-Superior
> sform_zorient Anterior-to-Posterior
> file_type NIFTI-1+
> file_code 1
> descrip FSL5.0
> aux_file 10-1-0.dcm
>
>
>
> filename topup507_fout.nii.gz
>
> sizeof_hdr 348
> data_type FLOAT32
> dim0 3
> dim1 96
> dim2 96
> dim3 50
> dim4 1
> dim5 1
> dim6 1
> dim7 1
> vox_units mm
> time_units s
> datatype 16
> nbyper 4
> bitpix 32
> pixdim0 0.000000
> pixdim1 1.000000
> pixdim2 1.000000
> pixdim3 1.000000
> pixdim4 1.000000
> pixdim5 0.000000
> pixdim6 0.000000
> pixdim7 0.000000
> vox_offset 352
> cal_max 0.0000
> cal_min 0.0000
> scl_slope 1.000000
> scl_inter 0.000000
> phase_dim 0
> freq_dim 0
> slice_dim 0
> slice_name Unknown
> slice_code 0
> slice_start 0
> slice_end 0
> slice_duration 0.000000
> time_offset 0.000000
> intent Unknown
> intent_code 2018
> intent_name
> intent_p1 0.000000
> intent_p2 0.000000
> intent_p3 0.000000
> qform_name Unknown
> qform_code 0
> qto_xyz:1 1.000000 0.000000 0.000000 0.000000
> qto_xyz:2 0.000000 1.000000 0.000000 0.000000
> qto_xyz:3 0.000000 0.000000 1.000000 0.000000
> qto_xyz:4 0.000000 0.000000 0.000000 1.000000
> qform_xorient Left-to-Right
> qform_yorient Posterior-to-Anterior
> qform_zorient Inferior-to-Superior
> sform_name Unknown
> sform_code 0
> sto_xyz:1 0.000000 0.000000 0.000000 0.000000
> sto_xyz:2 0.000000 0.000000 0.000000 0.000000
> sto_xyz:3 0.000000 0.000000 0.000000 0.000000
> sto_xyz:4 0.000000 0.000000 0.000000 0.000000
> sform_xorient Unknown
> sform_yorient Unknown
> sform_zorient Unknown
> file_type NIFTI-1+
> file_code 1
> descrip FSL5.0
> aux_file
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