Hi Andreas,
Thank you very much!
Ok, I try to use applywarp.
Thanks,
Hiroki
(2014/08/10 19:36), Andreas Bartsch wrote:
> Hi,
>
>> Is it right?
> Yes.
>> how should I apply the epi_reg to multiple images
>
> If I understand you correctly, you may want to take the output of epi_reg
> and use applywarp with it.
> Cheers,
> Andreas
>
>
> Am 10.08.14 10:22 schrieb "Hiroki Kurashige" unter <[log in to unmask]>:
>
>> Hi Mark,
>>
>> Thank you for the reply.
>> I will try to use epi_reg.
>>
>> I have several questions about epi_reg.
>>
>> To make a fieldmap image in rad/s for epi_reg, I think I should do
>> fsl_prepare_fieldmap because my data were obtained using
>> gre_field_mapping sequence of Siemens scanner.
>> I have (two) magnitude data and one so-called presubtracted phase data
>> (which may be SPM term).
>> I guess that the phase_image in fsl_prepare_fieldmap means presubtracted
>> phase data and the magnitude_image means the shorter TE magnitude data.
>> Is it right?
>>
>> Then, how should I apply the epi_reg to multiple images?
>> Because my data are motion-corrected fMRI data, I need to apply the same
>> registration and de-distortion to multiple images.
>>
>> Thanks,
>> Hiroki
>>
>> (2014/08/09 19:11), Mark Jenkinson wrote:
>>> Hi,
>>>
>>> Use the epi_reg script (
>>> http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT/UserGuide#epi_reg ) , as
>>> this is what it is designed for.
>>>
>>> All the best,
>>> Mark
>>>
>>>
>>> On 8 Aug 2014, at 11:14, Hiroki Kurashige <[log in to unmask]> wrote:
>>>
>>>> Dear FSL experts,
>>>>
>>>> I would like to use bbr in flirt.
>>>> So, I read the help of flirt and found the options related to bbr,
>>>> -wmseg, -wmcoords and -wmnorms.
>>>> However, I don't know that how I should set these options.
>>>> Could you mind let me know the example of the setting of these options?
>>>>
>>>> I guess that -wmseg is the white matter nifti file separated from the
>>>> others.
>>>> But I don't know how I can make it using FSL tool.
>>>>
>>>> Thanks,
>>>> Hiroki
>>>
>
---
アバスト! アンチウイルス によって保護されているため、このメールはウイルスやマルウェアに感染していません。
http://www.avast.com
|