Hi,
I have had the same problem on OSX 10.6.8.
I reverted back to the previous fsl_sub and that solved the issue.
Any reason not to use the previous fsl_sub version? Should I better do the
same, i.e. comment lines 92-98 out?
Cheers,
Andreas
Am 22.07.14 13:36 schrieb "Diederick Stoffers" unter
<[log in to unmask]>:
>Hi Matthew,
>
>After modification the job will now start locally without fatal errors
>but it wonąt submit to our grid (Son of Grid Engine 8.1.7). I now
>commented lines 92-98 and all is well again.
>
>Diederick
>
>On 22 Jul 2014, at 12:45, Matthew Webster <[log in to unmask]>
>wrote:
>
>> Hi Diederick,
>> Can you modify the line in $FSLDIR/bin/fsl_sub
>>reading:
>>
>> echo "Warning: job submission on a cluster node attempted, running
>>without submission" >&2
>>
>> to
>>
>> echo "Warning: job submission on a cluster node attempted, running
>>without submission" >&1
>>
>> and let me know if that solves your problem?
>>
>> Kind Regards
>> Matthew
>>
>>> Hi,
>>>
>>> Did this latest version update include changes to fsl_sub? 5.0.6 runs
>>>fine on our SGE grid while Feat in 5.0.7 fails at submission with the
>>>error
>>>
>>> Warning: job submission on a cluster node attempt, running locally
>>>without submission
>>>
>>> FATAL ERROR ENCOUNTERED
>>>
>>> Cheers,
>>>
>>> Diederick
>>>
>>>
>>>
>>> On 14 Jul 2014, at 12:44, Matthew Webster
>>><[log in to unmask]> wrote:
>>>
>>>> FSL 5.0.7 has been released.
>>>>
>>>> * The analysis options for lower-level FEAT have been simplified to
>>>>match changes in the processing pipeline
>>>> * FSL can now be compiled on the latest version of OSX ( using LLVM )
>>>> * Improvements have been made to the accuracy of POSSUM for a range
>>>>of smaller voxel sizes and large motions.
>>>> * oxford_asl: Corrected the values for inversion efficiency for pASL
>>>>and cASL data, correct assignment of default BAT value for cASL (now
>>>>matches with usage).
>>>> * Connectivity-based parcellation atlases have been added, kindly
>>>>provided by Rogier B. Mars.
>>>>
>>>> The full distribution can be downloaded from
>>>>
>>>> http://www.fmrib.ox.ac.uk/fsldownloads/
>>>>
>>>> either by the installer script or direct download.
>>>>
>>>> while incremental patches from previous FSL 5 versions can be
>>>>downloaded from
>>>>
>>>> http://www.fmrib.ox.ac.uk/fsldownloads/patches
>>>>
>>>> A patch for Debian/Ubuntu should be available sometime soon, courtesy
>>>>of Michael Hanke.
>>>>
>>>> Kind Regards
>>>>
>>>> Matthew
>>>
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