Dear Sjors,
I am trying to work with RELION, and have the following problem.
I am pre-processing my images (CTF estimation) and i am ending up with the following error always, when i try to queue on the cluster and can not seem to fix it ( i assure that all the files are in proper places)
"ctffind3.exe: Command not found."
However, it generates the .com, .log and .ctf files.
I have the latest version of ctffind3 and i am using RELION-1.3.
I am highlighting the qsub.csh script just for your reference.
I guess i am making a very trivial mistake and will be very grateful for advice if any.
my qsub.csh file is.
#!/bin/tcsh*
#$ -pe openmpi 50*
#$ -e error-file*
#$ -o output*
#$ -cwd*
#$ -S /bin/tcsh*
# Environment*
source ~/.tcshrc*
mpiexec -n XXXmpinodesXXX XXXcommandXXX*
Thank you very much in advance for your time,
Shyamal
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