Hi, Jesper
I have found some information about img2imgcoord. Here is the link.
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT/UserGuide
And the following is the usage of img2imgcoord.
Usage: img2imgcoord [options] <filename containing coordinates>
Options are:
-src <filename of source image>
-dest <filename of destination image>
-xfm <filename of affine transform (e.g. source2dest.mat)>
-warp <filename of warpfield (e.g. intermediate2dest_warp.nii.gz)>
-premat <filename of pre-warp affine transform (e.g. source2intermediate.mat)> (default=identity)
-vox (all coordinates in voxels - default)
-mm (all coordinates in mm)
Note that the first three options are compulsory
According to these information I performed the following command and I got bad result.
img2imgcoord -src MNI152_T1_2mm -dest con01_T1_brain -warp inverted_warp -mm coordfile.txt
Is something wrong with my command? What’s the mean of “the first three options (-src, -dest, -xfm) are compulsory”?
I’m looking forward to your reply.
xuemei
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