Mark,
Thanks for the clarification. It would be great if the mcflirt page [1] can be updated to be clearer on this.
Gordon
[1] http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/MCFLIRT
On Jun 27, 2014, at 3:33 AM, Mark Jenkinson <[log in to unmask]> wrote:
> Hi,
>
> The stage 4 option does the internal calculations in the fourth stage using sinc, but you still need to specify whether you want the final application of the transformation (the resampling) to use sinc or spline using the -sinc_final or -spline_final options.
>
> All the best,
> Mark
>
>
>
> On 26 Jun 2014, at 19:52, Junqian Gordon Xu <[log in to unmask]> wrote:
>
>> We’ve noticed using "-stages 4” alone gave significantly blurrier result than “-sinc_final” in mcflirt. We are wondering what could cause the difference. Should we use “-stages 4” with “-sinc_final” together in FSL 5.0.x version?
>>
>> Thanks
>> Gordon
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