Hi Andras,
What did you put as "Working directory" in your ARIA2 project file (XML) ?
Benjamin
On 06/25/2014 02:56 AM, Andras Boeszoermenyi wrote:
> Hi all,
>
> I think this or a similar problem was discussed here in February, but I
> can't see a resolution.
>
> I am trying to run aria locally and I set up cns and aria and imported
> all the necessary patches.
>
> I am running analysis2.4 on a mac with maverix and also on linux with
> ubuntu. I tried cns_1.2 and cns_1.21.
>
> I am getting this error message:
>
> Traceback (most recent call last):
>
> File "/Applications/ariagrid2.3/aria2.py", line 903, in <module>
>
> verbose_level, use_condor=condor)
>
> File "/Applications/ariagrid2.3/aria2.py", line 813, in run_aria
>
> project.go(use_condor)
>
> File "/Applications/ariagrid2.3/src/py/aria/Project.py", line 1577, in go
>
> first_iteration = self.finalize()
>
> File "/Applications/ariagrid2.3/src/py/aria/Project.py", line 1562,
> in finalize
>
> protocol.finalize_engine(self.getMolecule())
>
> File "/Applications/ariagrid2.3/src/py/aria/Protocol.py", line 1530,
> in finalize_engine
>
> engine.prepare(self.getSettings(), molecule)
>
> File "/Applications/ariagrid2.3/src/py/aria/cns.py", line 2070, in
> prepare
>
> self.create_psf_file(protocol_settings, replace)
>
> File "/Applications/ariagrid2.3/src/py/aria/cns.py", line 1957, in
> create_psf_file
>
> self.error(IOError, s % psf_file)
>
> File "/Applications/ariagrid2.3/src/py/aria/ariabase.py", line 221,
> in error
>
> raise exception, msg
>
> IOError: USER ERROR <aria.cns.CNS> File
> "/Applications/ariagrid2.3/src/py/aria/cns.py", line 2070 in prepare
>
> An error occurered during creation of the PSF-file:
> "/*/2014_June22_1.psf" could not be found.
>
>
> Any ideas on how to resolve this?
>
>
> Best,
>
> Andras
>
--
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Dr Benjamin Bardiaux | Bioinformatique Structurale
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