Dear Mark,
Thanks for your clear answer!
I have one remaining questions though; I have run the vertex analysis in native space (--useReconNative), so multiplying the output masks of vertex with ROI images created in MNI space is problematic. In fact, I gave it a trie and got an error message regarding the difference in orientation of the images. So what would be the best way to deal with this issue?
I know that running vertex in MNI space would solve this issue, but given our sample we would prefer to run vertex in native space.
Lastly, is it right that the output of the vertex analysis is depicting the boundary of a structure rather than the entire structure?
Look forward to your response.
Thanks in advance.
Regards,
Mauricio
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