You're just running out of RAM. Either do this on a bigger computer, or
you may want to try the --split_per_micrograph option (at the top of my
head not sure it would help though).
On 03/05/2014 11:34 AM, Ludovic Renault wrote:
> Hi all,
> I have an error when I try creating a stack from a star file.
> I have a 'big' star file after extraction. i cleaned up a bit with 2d
> Since my data is phase flipped, I wanted to create a stack to refine
> with another program.
> command is:
> relion_stack_create --i stack.star --o stack
> error is:
> Resizing the output stack to 234855 images of size: 240x240x1
> This will require 4.78883Gb of memory....
> Allocate: No space left
> File: ./src/multidim_array.h line: 961
> I have tried with the original dataset, then with different subset and
> always have this error.
> I have tried on a different sample dataset and it's working fine.
> How can I resolve this?
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