Hi,
If you've checked the images and they look well aligned, and the anatomical labels are still in the correct places, then you can ignore this warning.
All the best,
Mark
On 22 Feb 2014, at 09:49, Stefano <[log in to unmask]> wrote:
> HI,
>
> as known by previous mail in this topic I'd like to performed a voxel-vased statistic on probtractx output.
>
> To improve the co-registration between probtrackx output I'm using fslroi.
> fslroi <input> <output> <xmin> <xsize> <ymin> <ysize> <zmin> <zsize>
>
> In this way, the probtrackx outputs result well aligned for voxel-based statistic.
>
> Before to performed randomize, I used fslmerge to concatenated all files.
>
> When I run that after fslroi I have this error (it occur only after fsl roi correction):
>
> WARNING:: Inconsistent orientations for individual images when attempting to merge.
> Merge will use voxel-based orientation which is probably incorrect - *PLEASE CHECK*!
>
> The fslroi seem be well aligned. fslinfo produce these info for all files:
>
> data_type FLOAT32
> dim1 182
> dim2 218
> dim3 182
> dim4 1
> datatype 16
> pixdim1 1.0000000000
> pixdim2 1.0000000000
> pixdim3 1.0000000000
> pixdim4 1.0000000000
>
> Difference were found only for cal_max.
>
> How can I resolve?
>
> Thank you very much,
>
>
> Stefano
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