Hi Jeff
Please see below a previous post on something similar. The script assumes that you have run eddy_correct and extracts displacements and rotations for the diffusion-weighted volumes.
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind1101&L=fsl&D=0&1=fsl&9=A&I=-3&J=on&d=No+Match%3BMatch%3BMatches&z=4&P=115116
Cheers
Stam
On 11 Feb 2014, at 21:11, Jeff Waugh <[log in to unmask]> wrote:
> Hello experts,
> Is there a command within FSL that outputs a measure of subject motion
> from a DTI scan? I know that eddy and eddy_correct are able to correct
> for simple head motion, but is there a way to do a larger scale motion
> correction? Or at the least, an output that will give an assessment of
> patient motion that we could use as a regressor?
>
> Thank you,
> Jeff
>
>
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