Dear Pam,
>
> invwarp --ref=T1 --warp=T1_to_MNI_nonlin_coeff --out=warps_into_my_struct_space
>
> And here's the result:
>
> Image Exception : #22 :: ERROR: Could not open image T1_to_MNI_nonlin_coeff
> invwarp: Problem reading warp-file T1_to_MNI_nonlin_coeff
I haven’t come across this problem before. Can I please ask you to try and use the same warp-file with applywarp so we can see if the problem is specific to invwarp, or if it is the warp-file that is corrupt? And then let us know the results.
Jesper
>
> I've tried this with and without specifying the extensions (i.e.,
> .nii.gz). To be thorough, I also tried it using -r -w and -o. I also
> opened T1_to_MNI_nonlin_coeff.nii.gz in flsview, and it looks as I
> would expect.
>
>
> Any guidance is appreciated.
>
> Thanks,
> Pam
>
> --
> Pamela Pallett, Ph.D.
> Post-doctoral Researcher
> Computational Biology and Cognitive Science Lab
> Department of Electrical and Computer Engineering
> Ohio State University
> 2015 Neil Avenue
> Columbus, OH 43210 USA
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