OK, that's Brian's observation just now as well. I'm surprised (well, did not remember!) that bruk2ucsf changes the block size when it's doing the conversion but it does (I just checked on a 3rrr), so that is the difference. I guess what this means is that we should be reading multiple blocks in some dimensions, a non-trivial change in v2 but we'll keep that in mind in v3.
Wayne
On 26 Feb 2014, at 15:26, Phelan, Marie wrote:
> Hi Wayne
>
> We had this discussion before... for whatever reason 3rrr do not run as smoothly as blocked ucsfs:
> https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=CCPNMR;3f15ec3c.1205
>
> However I can't explain exactly why this is...again we discussed this in the above thread.
>
> Best wishes
>
> Marie
>
> NMR Centre
> Biological Sciences
> University of Liverpool
> Crown Street
> Liverpool
> L697ZB
> 0151 795 4398
> ________________________________________
> From: CcpNmr software mailing list [[log in to unmask]] on behalf of Wayne Boucher [[log in to unmask]]
> Sent: Wednesday, February 26, 2014 2:46 PM
> To: [log in to unmask]
> Subject: Re: bruk2ucsf issue in linux mint 64-bit
>
> Hello,
>
> You should not need to run bruk2ucsf at all because you should be able to load up 3rrr files directly in Analysis. (So unless you are also wanting to run Sparky on the data.) In Analysis you select the Bruker option in the "File format" and you select the procs file but you don't have to navigate down into the directory which contains this because it is looked for three levels down, so you should be able to click on the procs file in the file selection table when you navigate into the top Bruker directory for the experiment.
>
> Wayne
>
> On 26 Feb 2014, at 14:37, Fowler, Andrew wrote:
>
>> Hi Dave,
>>
>> Did you make a copy of the bruk2ucsf program - which comes with Sparky -
>> in the pdata/1 directory? That's what you're telling it to run when you
>> type ./bruk2ucsf. I'd try it without the dot (if you have Sparky's bin
>> directory in your path), or type in the full path which is probably
>> something like /usr/local/Sparky/bin/bruk2ucsf or
>> $HOME/Sparky/bin/bruk2ucsf.
>>
>> Cheers,
>> Andrew
>>
>>
>>
>>
>> On 2/26/14 6:36 AM, "L. David Finger" <[log in to unmask]> wrote:
>>
>>> I have recently partitioned my hard drive to add linux mint 64-bit to my
>>> computer. I have downloaded CCPNMR linux 64-bit, and it runs beautifully.
>>> However, when I run the bruker2ucsf conversion program on my 3rrr files,
>>> I receive an error. The following is what I have entered into the
>>> terminal in the pdata/1/ directory of the data set (please bear in mind
>>> that I have copied the program into this directory).
>>>
>>> ./bruk2ucsf 3rrr hf336_trhnca.ucsf
>>> bash: ./bruk2ucsf: No such file or directory
>>>
>>> I have tried to look at the program using the nano and gedit command,
>>> but it is jibberish. I was able to run this program on a 32-bit computer
>>> running ubuntu, but linux mint 64 bit will not. Is there something I must
>>> download to run a script like this? Sorry to take your time with what is
>>> likely a novice problem, but I am pretty new to this linux and CCPNMR
>>> stuff.
>>>
>>> Thanks,
>>> Dave
>>
>>
>>
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