Saad, i run probtrackx2 with 100 samples per voxel and the connectivity matrix is still extremely scarce despite the sample tract distributions covering all brain and most targets.
Would you have any idea what is the issue? If you were so kind as to have a look at it i sent you the seed file, targets, sample tract distributions output and all logdir files by email.
I would be very grateful for your help,
Michael
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