You can by using an extra argument (True or #t to get the animation)
fit_waters(imol, True)
or
(fit-waters imol #t)
Bernhard
> Dear Joe,
>
> We'll need info from the experts, but as far as I'm aware it's not
> possible to get the animation.
>
> Venlig hilsen/best regards
> Folmer Fredslund
>
> On Feb 5, 2014 7:05 PM, "Joseph Noel" <[log in to unmask]
> <mailto:[log in to unmask]>> wrote:
>
> Dear Folmer!
>
> Thanks! That is the one I am familiar with but wasn't sure how I
> could animate it like for the protein. I guess maybe its not possible.
>
> Best-
>
> Joe
> ______________________________________________________________________________________
> Joseph P. Noel, Ph.D.
> Arthur and Julie Woodrow Chair
> Investigator, Howard Hughes Medical Institute
> Professor, The Jack H. Skirball Center for Chemical Biology and
> Proteomics
> The Salk Institute for Biological Studies
> 10010 North Torrey Pines Road
> La Jolla, CA 92037 USA
>
> Phone: (858) 453-4100 extension 1442
> <tel:%28858%29%20453-4100%20extension%201442>
> Cell: (858) 349-4700 <tel:%28858%29%20349-4700>
> Fax: (858) 597-0855 <tel:%28858%29%20597-0855>
> E-mail: [log in to unmask] <mailto:[log in to unmask]>
>
> Publications & Citations:
> http://scholar.google.com/citations?user=xiL1lscAAAAJ
>
> Homepage Salk: http://www.salk.edu/faculty/noel.html
> Homepage HHMI: http://hhmi.org/research/investigators/noel.html
> ______________________________________________________________________________________
>
> On Feb 4, 2014, at 10:15 PM, Folmer Fredslund <[log in to unmask]
> <mailto:[log in to unmask]>> wrote:
>
>> Dear Joseph,
>>
>> Yes, it's possible, but not you don't get any real time updates
>> like you do for the protein.
>>
>> Here's a link to the fine manual:
>> http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#Refine-All-Waters
>>
>> Venlig hilsen
>> Folmer Fredslund
>>
>> On Feb 5, 2014 12:05 AM, "Joseph Noel" <[log in to unmask]
>> <mailto:[log in to unmask]>> wrote:
>>
>> Is there a way in COOT to automate the real space refine of
>> waters - something equivalent to the Extension, All Molecule,
>> Fit Protein?
>> ______________________________________________________________________________________
>> Joseph P. Noel, Ph.D.
>> Arthur and Julie Woodrow Chair
>> Investigator, Howard Hughes Medical Institute
>> Professor, The Jack H. Skirball Center for Chemical Biology
>> and Proteomics
>> The Salk Institute for Biological Studies
>> 10010 North Torrey Pines Road
>> La Jolla, CA 92037 USA
>>
>> Phone: (858) 453-4100 extension 1442
>> <tel:%28858%29%20453-4100%20extension%201442>
>> Cell: (858) 349-4700 <tel:%28858%29%20349-4700>
>> Fax: (858) 597-0855 <tel:%28858%29%20597-0855>
>> E-mail: [log in to unmask] <mailto:[log in to unmask]>
>>
>> Publications & Citations:
>> http://scholar.google.com/citations?user=xiL1lscAAAAJ
>>
>> Homepage Salk: http://www.salk.edu/faculty/noel.html
>> Homepage HHMI: http://hhmi.org/research/investigators/noel.html
>> ______________________________________________________________________________________
>>
>
--
***************************************************
Dr. Bernhard Lohkamp
Associate Professor/Docent
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden
phone: (+46) 08-52487651
fax: (+46) 08-327626
email: [log in to unmask]
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