Hi Ludo,
There is no debugging option, but you could write your own statements in
the code (e.g. src/ml_optimiser_mpi.cpp) to make this yourself. Otherwise,
it often helps to try and run a very small job first, e.g. with few and
small images.
HTH, S
> Hi Sjors,
>
> I'm trying to sort out issues we are having with our cluster.
> I was able to start jobs with 200-400 cpus a few weeks ago and now I can't
> anymore, even with the same dataset than a few weeks ago.
> While it most likely is not related to relion, I was still wondering if
> there was some verbose option to get more output from relion?? More
> specifically, is it possible to enable any sort of debugging with the code
> to capture exit/error codes?
>
> We only use relion on the cluster so can't test any other soft, but the IT
> head started a script using 200 cpus without issue.
> So far all I know is that is is not a disk storage issue and the higher
> verbose from the logs when started the scripts do not show anything out of
> line.
> Any tips appreciated.
> Ludo
>
--
Sjors Scheres
MRC Laboratory of Molecular Biology
Francis Crick Avenue, Cambridge Biomedical Campus
Cambridge CB2 0QH, U.K.
tel: +44 (0)1223 267061
http://www2.mrc-lmb.cam.ac.uk/groups/scheres
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