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Subject:

MaxFilter pipeline

From:

Craig McAllister <[log in to unmask]>

Reply-To:

Craig McAllister <[log in to unmask]>

Date:

Fri, 13 Dec 2013 17:13:16 +0000

Content-Type:

text/plain

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Parts/Attachments

text/plain (21 lines)

Hi all,

I've performed an experiment where I collected two runs in a single session. I want to Maxfilter the data, apply movement compensation and then align the runs to the same reference position. I've had a good read through the manual (using ver 2.2.10 btw) and this forum, but I must admit I'm still rather sketchy on how this is achieved through the command line. My best guess is below. 

Here I am attempting to estimate the head position during run1: 

maxfilter -f run1.fif -o run1_quat.fif -origin fit -frame head -headpos 

Here I am attempting to apply movement compensation to run2 and then transform the head position estimated in run1:

maxfilter -f run2.fif -o run2_tsss_mc.fif -st -movecomp -hp run2.pos -trans run1_quat.fif 

Can someone who knows how to make the magic happen please advise...

1. If I am approaching the steps in the correct order?
2. If the above commands will achieve what I want to do?
3. Is '-origin fit -frame head' the same as selecting fit to isotrack points via the gui? 

cheers
Craig

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