The regularize command (without a map) tends to move things more than I think they should. Perhaps the end atoms should be fixed. How would one restrain atoms to their starting coordinates? From the old days I recall Frodo's "REFI" command being better behaved. Any thoughts on this?
Mark Saper
Dept of Biological Chemistry, Univ of Michigan
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Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry, U-M Medical School
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