Hi Yaroslav,
Thanks a lot for your answer. that worked perfectly.
best regards,
Antoine
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De : FSL - FMRIB's Software Library [[log in to unmask]] de la part de Yaroslav Halchenko [[log in to unmask]]
Envoyé : vendredi 8 novembre 2013 20:17
À : [log in to unmask]
Objet : Re: [FSL] Extract mask from harvard/oxford atlas
e.g. smth like
fslroi /usr/share/fsl/data/atlases/HarvardOxford/HarvardOxford-cortl-prob-2mm.nii.gz /tmp/roi-10.nii.gz 10 1
which you might like to place in a loop or with grepping from xml to
fetch labels
On Fri, 08 Nov 2013, Bernas, A. wrote:
> Hi everybody,
> Is it possible to download each structure (in .nii) separatly of the oxford/harvard cortical atlas ?
> Otherwise I tried with the tool 'structure' and the '+' and then 'save as ...' in fslview as I could see in previous topics. But I do not manage to save several structures in the same time (in fact I want a prefrontal cortex mask, with a few parts of the oxford/harvad atlas).
> Thanks in advance
> Best regards,
> Antoine Bernas.
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Senior Research Associate, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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