Dear all

If you had a problem similar to that Joachim and Ingo had (see below), please run
sudo <path>/ccp4-6.4.0/bin/ccp4um
where <path> is the full path to your ccp4-6.4.0 installation,
and uninstall the last update.

Then you can launch ccp4i and install it again as usual.

Thanks!

Andrey

On 6 Nov 2013, at 13:13, Joachim Reichelt wrote:

> Hi,
> 
> I just installed the update using ccp4um.
> All I get now is:
> 
>> ccp4i
> Def file /software/ccp4-6.4.0/share/ccp4i/etc/unix/configure.def
> does not have correct file label configure
> Def file /software/ccp4-6.4.0/share/ccp4i/etc/preferences.def.dist
> does not have correct file label preferences
> Error in startup script: can't read "array(MAPVIEWER_DEFAULT)": no such element in array
>    while executing
> "set viewercmd $array(MAPVIEWER_DEFAULT)"
>    (procedure "set_default_mapviewer" line 9)
>    invoked from within
> "set_default_mapviewer $arrayname"
>    ("preferences" arm line 2)
>    invoked from within
> "switch -- $taskname {
>    directories {
>      catch {update_defdir_menu $arrayname}
>    } configure {
>      # We over-write the user TYPEDEF_LIST with..."
>    (procedure "InitialisePreferences" line 113)
>    invoked from within
> "InitialisePreferences preferences preferences"
>    (file "/software/ccp4-6.4.0/share/ccp4i/bin/ccp4i.tcl" line 128)
>    invoked from within
> "source [file join $env(CCP4I_TOP) bin ccp4i.tcl]"
>    (file "/software/ccp4-6.4.0/bin/ccp4i" line 12)
> 
> 
> What went wrong?
> 
> Am 06.11.2013 um 13:52 schrieb Andrey Lebedev <[log in to unmask]>:
> 
>> Dear CCP4 Users
>> 
>> An update for the CCP4-6.4.0 series has just been released. This is the first update for both CCP4 and ARP/wARP in tandem.
>> 
>> The ARP/wARP component of this update will be available to those Mac and Linux users who have previously installed both packages via the CCP4 Package manager or from the joint bundle downloaded from CCP4 web-site. A standalone ARP/wARP package including the current update can be downloaded from the EMBL-Hamburg site at www.arp-warp.org<http://www.arp-warp.org/>.
>> 
>> The following changes will be applied to the ARP/wARP installation:
>> 
>> • The use of non-crystallographic symmetry for protein chain tracing has been enabled (it was accidentally disabled in version 7.4).
>> • The `SAD refinement protocol' (Murshudov et al 2011) has undergone many fixes and now works well.
>> • The routine for ligand identification has been made faster and some small bugs have been fixed.
>> • A few bugs have been fixed in the ARP/wARP installer and shell-specific problems sometimes occurring on Linux should now be cured.
>> • The manual has been updated.
>> 
>> The following changes will be applied to the CCP4-6.4.0 installation:
>> 
>> • MrBUMP (all): a new option of model re-building after SHELXE; a fix for phaser_sculptor dispatcher.
>> • Xia2 (windows): update to release 0.3.6.3 (fixes ctruncate issue).
>> • aimless (all): bug fixes.
>> • pointless (all): bug fixes.
>> • ViewHKL (all): additional visual control to enhance weak reflections and bug fixes.
>> • truncate (Mac): Fixed harvesting option of old truncate.
>> • Molrep: New interface.
>> • Update (all): Increased maximum waiting time for background update check in ccp4i.
>> 
>> Andrey Lebedev
>> 
>> 
>> --
>> Scanned by iCritical.
>> 
> 
> Mit freundlichen Grüßen
> 
> Joachim Reichelt
> 
> 
> 
> 
> 
> 
> 
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-- 
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