Hi Rosalia,
I think I'm still a little bit confused on using the mask I make over the stroke lesion. Do I add it to the T1 brain and use this image as the input image, or do I just use the stroke mask as the input weighting?
What I have so far:
FLIRT
Reference Image: MNI152_T1_1mm_brain.nii.gz
Input Image: Subject T1
Input Weighting: (Lesion Mask) or (T1 image with Lesion Mask)
Thanks for the help,
Derek
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