Dear Elise,
Try the 3Dss server (http://cluster.physics.iisc.ernet.in/3dss/). You can superimpose up to 20 structures and look for invariant waters.
Cheers,
Uli
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dr ulrich gohlke
staff scientist - macromolecular structure and interaction
max-delbrück-center for molecular medicine (mdc)
+49 30 9406 - 2725 (w)
+49 30 9406 - 2548 (fax)
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http://www.mdc-berlin.de/en/research/research_teams/macromolecular_structure_and_interaction/
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