Hello,
you can try Nucplot. http://www.ebi.ac.uk/thornton-srv/software/NUCPLOT/
Very usefull and tunnable to find and show dsDNA/protein complex.
Hope to help.
Nicolas
Le 16/10/13 21:23, Eike Schulz a écrit :
> Hello everyone,
>
> I would like to display the interactions of a protein dsDNA complex in
> a simplified 2D plot, similar to what LIGPLOT does for protein ligand
> interactions. In many articles you find interactions displayed in such
> a way but as far as I know those are "hand-made". In my experience
> LIGPLOT itself is suboptimal if there are too many interactions to
> display …
>
> Thanks a lot in advance for your suggestions.
>
> Eike
>
>
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