Dear Xuehui,
In theory you could. In practice moving data from one CCPN project to
another is cumbersome, and quite tricky to set up techincally (the two
things are related). You could try DataShifter, but no guarantees.
If the diagnosis is correct (I have not followed this), a better solution
would be to leave the project alone and not work on it while Aria is
running. Then there would be no inconsistencies that could cause problems.
Of course, if that did not helpo, we would have to look for another cause.
Yours,
Rasmus
---------------------------------------------------------------------------
Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Tue, 24 Sep 2013, Xue Liu wrote:
> Hi Wayne,
> Thanks a lot for the reply. Can I save the current project somewhere else
> (say the current is projA and the other is projB) and then after using ARIA
> for structure calculation in projA, I copy the results to projB which have
> not really run a ARIA calculation?
>
> Best Regards,
>
> Xuehui
>
> ____________________________________________________________________________
> From: Wayne Boucher <[log in to unmask]>
> To: [log in to unmask]
> Sent: Tuesday, September 24, 2013 11:44 PM
> Subject: Re: local Aria problem
>
> Hello,
> A lot of people hit this kind of error. I'm assuming (but I might be wrong)
> that Analysis and Aria are both working on the same project directory and so
> are trampling each other when they save the project. At least that could
> lead to such an error, although possibly there is some kind of bug as well
> in the Aria to CCPN conversion.
>
> Wayne
>
> On 24 Sep 2013, at 01:32, Xue Liu <[log in to unmask]> wrote:
>
> Hi all,
> I was trying to calculate the structure with locally installed Aria2.3
> (cns1.21, all are fine when using alone), everything seemed ok until I
> tried to analysis the structures and the restraints. I could see that
> the structures of the last iteration and refinement had been put into
> the project data and I could work with them. But I could not see any
> Aria generated restraint set as described in the tutorial
> instructions. Could someone tell me what the problem is? BYT, I 've
> already downloaded the aria patch and replaced the files in aria
> installation folder.
>
> I got the following traceback when I first click
> M:Structure:Stuctures:
>
> Error loading file for: <ccp.nmr.NmrConstraint.NmrConstraintStore
> [2]>
> Reading: <open file'/home/xhliu/Data/Projects/mhh/mhh_c1_10_calc/ccp/nmr/NmrConstraint/2+mhh_c
> 1_10_calc_xhliu_2013-09-
> 23-18-40-05-638_00001.xml', mode 'r' at 0x26df9b78>
> Last xml tag read: NMRC.NmrConstraintStore.structureGenerations
> Parser state was: reading
> Current object was: <ccp.nmr.NmrConstraint.NmrConstraintStore [2]>
> Exception in Tkinter callback
> Traceback (most recent call last):
> File
> "/home/xhliu/programs/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py",
> line 1410, in __call__
> return self.func(*args)
> File
> "/home/xhliu/programs/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py",
> line 495, in callit
> func(*args)
> File"/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/ccpnmr/analysis/popups/EditSt
> ructures.py", line 1336, in update
> violLists.update(model.violationLists)
> File"/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/ccp/api/molecule/MolStructure
> .py", line 5624, in getViolationLists
> root.refreshTopObjects('ccp.nmr.NmrConstraint')
> File"/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/memops/api/Implementation.py"
> , line 17701, in refreshTopObjects
> topObject = XmlIO.loadFromFile(self, filePath, partialLoad=True)
> File
> "/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/memops/format/xml/XmlIO.py",
> line 251, in loadFromFile
> partialLoad=partialLoad)
> File
> "/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/memops/format/xml/XmlIO.py",
> line 267, in loadFromStream
> partialLoad=partialLoad)
> File"/home/xhliu/programs/ccpnmr/ccpnmr2.3/python/memops/xml/Implementation.py"
> , line 5046, in loadFromStream
> % ((curMap['content']['.qName'], clazz.__name__, vv[1:-1]),))
> ApiError: No object found with package,class,key: ('ccp.nmr.Nmr',
> 'StructureGeneration', [1])
>
>
>
> Xuehui
>
>
>
>
>
>
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