Hi Mark,
thanks.
version of FSL: By FLS GUI I visualize 5.0.2.1.
There is another mode to check it?
machine/OS: OS X Mountain Lion
exact commands
concat_bvars all.bvars Diff01-R_Thal_first.bvars Diff02-R_Thal_first.bvars Diff03-R_Thal_first.bvars Diff04-R_Thal_first.bvars Diff05-R_Thal_first.bvars Diff06-R_Thal_first.bvars Diff07-R_Thal_first.bvars Diff08-R_Thal_first.bvars Diff09-R_Thal_first.bvars Diff10-R_Thal_first.bvars Diff11-R_Thal_first.bvars Diff12-R_Thal_first.bvars Diff13-R_Thal_first.bvars Diff14-R_Thal_first.bvars Diff15-R_Thal_first.bvars Diff16-R_Thal_first.bvars Diff17-R_Thal_first.bvars Diff18-R_Thal_first.bvars Con01-R_Thal_first.bvars Con02-R_Thal_first.bvars Con03-R_Thal_first.bvars Con04-R_Thal_first.bvars Con05-R_Thal_first.bvars Con06-R_Thal_first.bvars Con07-R_Thal_first.bvars Con08-R_Thal_first.bvars Con09-R_Thal_first.bvars Con10-R_Thal_first.bvars Con11-R_Thal_first.bvars
first_utils --vertexAnalysis --usebvars -i all.bvars -d Diff1_Con2.mat -o shape_analysis/Diff1_Con2_R_Thal --useReconNative --useRigidAlign -v > & shape_analysis/Diff1_Con2_R_Thal_output.txt
randomise -i Diff1_Con2_R_Thal.nii.gz -m Diff1_Con2_R_Thal_mask.nii.gz -o Diff1_Con2_R_Thal_rand -d Diff1_Con2.mat -t Diff1_Con2.con -f Diff1_Con2.fts --fonly -D -F 3
first_utils --vertexAnalysis --surfaceout --usebvars -i all.bvars -d Diff1_Con2.mat -o shape_analysis/Diff1_Con2_R_Thal --useReconNative --useRigidAlign -v > & shape_analysis/Diff1_Con2_R_Thal_output.txt
surface_fdr input.vtk
Stefano
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